R/mafft_native.R
mafft_jtt_exchangeability.Rd
A step of the mafft_native implementation. Called by jtt_matrix. See the file header for the source the module follows.
jtt_matrix
mafft_jtt_exchangeability()
A list with S, f.
S
f
j <- mafft_jtt_exchangeability() dim(j$S); sum(j$f) #> [1] 20 20 #> [1] 1